Biochemistry and Molecular Biology
- 101
- Abalone
- Program for bio-molecular modeling, particularly for molecular graphics and dynamics with implicit and explicit water models.
- 102
- Ascalaph Designer
- Program for creating molecular models, molecular mechanics simulations and development of the force fields by quantum chemical methods.
- 103
- ChemVis
- Visualization of physico-chemical structures in VML, from research at the Universities of Stuttgart and Erlangen in Nürnberg, Germany.
- 104
- Folding@home
- It is a distributed computing project which studies protein folding, misfolding, aggregation, and related diseases.
- 105
- GrAfSS: Graph Theoretic Applications for Structure Searching
- Graph theoretic methods for the analysis of structural relationships in biological macromolecules.
- 106
- Gromacs
- A molecular dynamics package primarily designed for biomolecular systems such as proteins and lipids. It is a free software.
- 107
- Jay Ponder Lab
- Graphical user interface to suites of molecular modeling tools, providing an integrated environment for engineering applications. Contacts for the group at Washington University School of Medicine in Saint Louis, Missouri.
- 108
- NAMD
- A parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD is distributed free of charge and includes source code.
- 109
- Prion Helical Wheels
- Java applet to illustrate alpha-helices, using a traditional helical wheel. Output as Postscript, JPEG, GIF or PICT.
- 110
- Sesame Project
- Protein structure-function software in multiple modules, maintained at the University of Wisconsin, Madison.
- 111
- TINKER
- A free molecular modeling package for molecular mechanics and dynamics, with some special features for biopolymers. Distributed as source code and as binaries for Windows9x, Linux and Mac.
- 112
- The Jalview Internal PDB Viewer
- Used to visualize three dimensional structure of macromolecules, using protein data bank format for atom coordinates.
- 113
- YASARA
- (Yet Another Scientific Artificial Reality Application) is an interactive real-time molecular dynamics program.
- 114
- ZMM Software Inc.
- Modeling tool for theoretical studies, employing molecular mechanics approach in combination with Monte Carlo energy minimization algorithm. Downloads on secure server, and contacts in Flamborough, Ontario.
- 115
- Carbohydrates: Chemical Structure
- Educational site describing the structures of sugars, starches, cellulose and other compounds of carbon, hydrogen and oxygen found in living organisms.
- 117
- Functional Glycomics Gateway
- Collaboration between the Consortium for Functional Glycomics and Nature Publishing Group. Includes glycomics news, resources, and databases of glycan-binding proteins, glycan structures, and glycosyltransferases.
- 118
- Glycobiology
- Article from Wikipedia on the study of the structure, biosynthesis, and biology of saccharides.
- 120
- Lipid Analysis Unit
- Providing training, literature citations specializing on fatty acids, triacylglycerols, phospholipids, glycolipids, using chromatography, NMR and electrospray mass spectrometry. Offers commercial lipid analysis and contract research through Mylnefield Research Services Ltd, at the SCRI in Dundee, Scotland.