Carnac
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Scan day: 09 February 2014 UTC
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Description: A free software tool for analysing the hypothetical secondary structure of a family of homologous RNA.
carnac :: RNA structure inference Predicting secondary structure for a set of homologous RNA sequences Carnac is a software tool for analysing the hypothetical secondary structure of a family of homologous RNA. It aims at predicting if the sequences actually share a common secondary structure. When this structure exists, Carnac is then able to correctly recover a large amount of the folded stems. The input is a set of single-stranded RNA sequences that need not to be aligned. The folding strategy relies on a thermodynamic model with energy minimization. It combines information coming from locally conserved elements of the primary structure and mutual information between sequences with covariations too.
Size: 711 chars
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WEBSITE Info
| Page title: | CARNAC |
| Keywords: | RNA, ARN, mfold, fold, structure, prediction, secondary structure |
| Description: | |
| IP-address: | 193.48.186.71 |
WHOIS Info
| NS | |
| WHOIS | status: ACTIVE status: ok |
| Date | created: 01/01/1995 last-update: 30/04/2010 changed: 12/04/2010 [email protected] changed: 08/11/2005 [email protected] changed: 07/05/2010 [email protected] changed: 12/04/2010 [email protected] |