Bioinformatics
- 181
- mreps : maximal tandem repeats search
- Open source tool for identifying serial repeats (tandem repeats) in DNA sequences.
- 182
- Graphical Codon Usage Analyzer
- Displays the codon quality in two different ways, codon usage frequency or relative adaptiveness values. FAQ included.
- 183
- NEBcutter
- Provides a DNA sequence analysis to find restriction enzymes sites. Finds also non-overlapping open reading frames using the E.coli genetic code.
- 184
- ORF Finder
- Identifies all ORFs using the standard or alternative genetic codes. Provides an interactive, graphical interface and allow for saving of a deduced amino acid sequence in various formats. Allows searching against the sequence database using the BLAST server.
- 185
- PlasMapper
- Offers server generated plasmid maps and image files, from input DNA sequences up to 20,000 bp. Includes citation, and downloadable source code. Maintained by the University of Alberta, USA.
- 186
- Primer-BLAST
- Provides primers specific to the PCR template sequence. Includes primer pair specificity checking against a selected database.
- 187
- REBsites
- Provides restriction enzyme digest analysis of the input DNA sequence. Results are presented graphically as a "virtual gel".
- 188
- Rare Codon Analysis
- Provides graphical and numerical representation of the codon adaptation index, frequency distribution and GC content of the DNA sequence. Maintained by the GenScript, USA.
- 189
- RestrictionMapper
- Finds restriction enzyme cleavage sites in linear and circular DNA sequences. Provides also a virtual digest function.
- 190
- WatCut
- Provides restriction analysis, silent mutation scanning and SNP-RFLP analysis. Allows for utilization of all commercially available type II restriction enzymes.
- 191
- Webcutter 2.0
- Provides a map of restriction enzyme sites and a list of non-cutting enzymes for a corresponding DNA sequence.
- 192
- SplitsTree 2
- Tool that uses split decomposition method to analyze and visualize distance data from biological sequences.
- 194
- 3D-PSSM Fold Recognition
- Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
- 195
- DisEMBL
- Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein.
- 196
- ELM - Functional Sites in Proteins
- Predicts functional sites (linear motifs) in proteins, such as post-translational modification sites, ligand motifs, and targeting signals. Context-based rules and logical filters are applied to improve predictions.
- 198
- Molecular Biology Tools Online
- Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide chain).